Pseudomonas protegens Pf-5, PFL_6161

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08447
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 698 953 4.0E-102
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 703 950 2.75E-89
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 527 683 3.0E-42
CDD cd01948 EAL IPR001633 EAL domain 704 943 5.64036E-111
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 532 690 4.71E-44
SMART SM00052 duf2_2 IPR001633 EAL domain 698 944 2.3E-120
Gene3D G3DSA:3.30.450.20 PAS domain - - 399 530 4.9E-29
Coils Coil Coil - - 265 285 -
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 526 685 1.2E-31
PANTHER PTHR44757 DIGUANYLATE CYCLASE DGCP - - 380 953 0.0
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 531 696 5.2E-50
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 406 522 7.2E-16
Coils Coil Coil - - 692 712 -
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 275 398 1.5E-6
Coils Coil Coil - - 212 260 -
SMART SM00086 pac_2 IPR001610 PAC motif 351 394 1.1E-4
CDD cd00130 PAS IPR000014 PAS domain 411 513 2.76547E-8
Pfam PF08447 PAS fold IPR013655 PAS fold-3 304 387 9.7E-20
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 284 396 5.06E-15
Gene3D G3DSA:3.30.450.20 PAS domain - - 269 390 6.0E-33
Pfam PF13426 PAS domain IPR000014 PAS domain 413 514 8.1E-14
CDD cd01949 GGDEF IPR000160 GGDEF domain 528 686 3.87545E-52
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 407 514 2.42E-23
SMART SM00086 pac_2 IPR001610 PAC motif 474 516 7.0E-4
SMART SM00091 pas_2 IPR000014 PAS domain 402 468 8.9E-6
FunFam G3DSA:3.20.20.450:FF:000001 Cyclic di-GMP phosphodiesterase yahA - - 699 954 3.8E-92
CDD cd00130 PAS IPR000014 PAS domain 289 391 7.64361E-7
Pfam PF00563 EAL domain IPR001633 EAL domain 704 939 8.9E-73
SMART SM00267 duf1_3 IPR000160 GGDEF domain 516 688 5.7E-54
SMART SM00091 pas_2 IPR000014 PAS domain 277 344 5.4

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.