Pseudomonas protegens CHA0, PFLCHA0_c02380

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01730
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0022857 transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01730
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0055085 transmembrane transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01730
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Coils Coil Coil - - 147 167 -
Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain 55 265 8.6E-16
SUPERFAMILY SSF111369 HlyD-like secretion proteins - - 46 273 3.4E-20
Gene3D G3DSA:1.10.287.470 Helix hairpin bin - - 89 162 7.3E-33
Gene3D G3DSA:2.40.30.170 - - - 48 257 7.3E-33
PANTHER PTHR30469 MULTIDRUG RESISTANCE PROTEIN MDTA - - 6 354 2.0E-73
Gene3D G3DSA:2.40.50.100 - - - 54 198 7.3E-33
Gene3D G3DSA:2.40.420.20 - - - 260 351 1.0E-15
NCBIfam TIGR01730 JCVI: efflux RND transporter periplasmic adaptor subunit IPR006143 RND efflux pump, membrane fusion protein 39 350 7.3E-72

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.