Pseudomonas protegens CHA0, PFLCHA0_c61220

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08447
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 590 755 5.7E-50
Gene3D G3DSA:3.30.450.20 PAS domain - - 458 589 5.3E-29
SMART SM00267 duf1_3 IPR000160 GGDEF domain 575 747 5.7E-54
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 591 749 5.18E-44
Coils Coil Coil - - 324 344 -
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 757 1012 4.5E-102
SMART SM00091 pas_2 IPR000014 PAS domain 336 403 5.4
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 465 581 7.8E-16
CDD cd01948 EAL IPR001633 EAL domain 763 1002 2.33272E-111
CDD cd00130 PAS IPR000014 PAS domain 470 572 2.28711E-8
Pfam PF00563 EAL domain IPR001633 EAL domain 763 998 9.9E-73
SMART SM00091 pas_2 IPR000014 PAS domain 461 527 8.9E-6
CDD cd01949 GGDEF IPR000160 GGDEF domain 587 745 1.91042E-52
PANTHER PTHR44757 DIGUANYLATE CYCLASE DGCP - - 294 1012 0.0
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 586 742 3.2E-42
Pfam PF13426 PAS domain IPR000014 PAS domain 472 573 8.7E-14
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 762 1009 3.14E-89
Coils Coil Coil - - 751 771 -
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 585 744 1.3E-31
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 466 573 2.79E-23
Coils Coil Coil - - 271 319 -
SMART SM00086 pac_2 IPR001610 PAC motif 410 453 1.1E-4
CDD cd00130 PAS IPR000014 PAS domain 348 450 5.62467E-7
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 334 457 1.6E-6
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 343 455 5.41E-15
SMART SM00052 duf2_2 IPR001633 EAL domain 757 1003 2.3E-120
Pfam PF08447 PAS fold IPR013655 PAS fold-3 363 446 1.0E-19
Gene3D G3DSA:3.30.450.20 PAS domain - - 328 449 6.5E-33
SMART SM00086 pac_2 IPR001610 PAC motif 533 575 7.0E-4
FunFam G3DSA:3.20.20.450:FF:000001 Cyclic di-GMP phosphodiesterase yahA - - 758 1013 4.2E-92

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.