Pseudomonas poae RE_1-1-14, H045_03525 (livM)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Cellular Component | GO:0016020 | membrane |
Inferred from Sequence Model
Term mapped from: InterPro:PF02653
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Molecular Function | GO:0015658 | branched-chain amino acid transmembrane transporter activity |
Inferred from Sequence Model
Term mapped from: InterPro:cd06581
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Molecular Function | GO:0022857 | transmembrane transporter activity |
Inferred from Sequence Model
Term mapped from: InterPro:PF02653
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0055085 | transmembrane transport |
Inferred from Sequence Model
Term mapped from: InterPro:PF02653
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
|
|
Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | ppz02024 | Quorum sensing | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | ppz02010 | ABC transporters | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Pfam | PF11862 | Domain of unknown function (DUF3382) | IPR021807 | High-affinity branched-chain amino acid transport system permease, LivHM, N-terminal | 5 | 104 | 1.5E-16 |
| Pfam | PF02653 | Branched-chain amino acid transport system / permease component | IPR001851 | ABC transporter, permease | 113 | 398 | 3.8E-60 |
| PANTHER | PTHR30482 | HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRANSPORT SYSTEM PERMEASE | IPR043428 | High-affinity branched-chain amino acid transport system permease protein LivM-like | 85 | 416 | 3.3E-114 |
| CDD | cd06581 | TM_PBP1_LivM_like | IPR043428 | High-affinity branched-chain amino acid transport system permease protein LivM-like | 119 | 407 | 3.32529E-81 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.