Pseudomonas poae RE_1-1-14, H045_10130

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0019867 outer membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01414
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF51126 Pectin lyase-like IPR011050 Pectin lyase fold/virulence factor 17 275 3.77E-35
PRINTS PR01484 Pertactin virulence factor family signature IPR003991 Pertactin virulence factor family 565 585 7.5E-23
PRINTS PR01484 Pertactin virulence factor family signature IPR003991 Pertactin virulence factor family 473 496 7.5E-23
PRINTS PR01484 Pertactin virulence factor family signature IPR003991 Pertactin virulence factor family 360 384 7.5E-23
PRINTS PR01484 Pertactin virulence factor family signature IPR003991 Pertactin virulence factor family 502 523 7.5E-23
PRINTS PR01484 Pertactin virulence factor family signature IPR003991 Pertactin virulence factor family 300 318 7.5E-23
NCBIfam TIGR01414 JCVI: outer membrane autotransporter barrel domain IPR006315 Outer membrane autotransporter barrel domain 183 585 2.0E-84
Pfam PF03797 Autotransporter beta-domain IPR005546 Autotransporter beta-domain 324 563 3.1E-48
SMART SM00869 Autotransporter_2 IPR005546 Autotransporter beta-domain 321 574 9.4E-45
PRINTS PR01484 Pertactin virulence factor family signature IPR003991 Pertactin virulence factor family 540 565 7.5E-23
SUPERFAMILY SSF103515 Autotransporter IPR036709 Autotransporter beta-domain superfamily 300 585 1.57E-51
Pfam PF03212 Pertactin IPR004899 Pertactin, central region 165 275 7.1E-27
PANTHER PTHR35037 C-TERMINAL REGION OF AIDA-LIKE PROTEIN - - 48 585 1.6E-35
Gene3D G3DSA:2.160.20.20 - IPR012332 Autotransporter, pectate lyase C-like domain superfamily 2 277 6.2E-53
Gene3D G3DSA:2.40.128.130 - IPR036709 Autotransporter beta-domain superfamily 278 585 6.3E-65
PRINTS PR01484 Pertactin virulence factor family signature IPR003991 Pertactin virulence factor family 454 471 7.5E-23
CDD cd01343 PL1_Passenger_AT - - 53 277 2.35797E-43

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.