Pseudomonas denitrificans ATCC 13867, H681_00805
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Cellular Component | GO:0016020 | membrane |
Inferred from Sequence Model
Term mapped from: InterPro:SM00304
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0007165 | signal transduction |
Inferred from Sequence Model
Term mapped from: InterPro:SM00304
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0006935 | chemotaxis |
Inferred from Sequence Model
Term mapped from: InterPro:PR00260
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Molecular Function | GO:0004888 | transmembrane signaling receptor activity |
Inferred from Sequence Model
Term mapped from: InterPro:PR00260
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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|
Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | pdr02030 | Bacterial chemotaxis | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | pdr02020 | Two-component system | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| FunFam | G3DSA:3.30.450.20:FF:000075 | Methyl-accepting chemotaxis protein | - | - | 163 | 282 | 9.9E-52 |
| Gene3D | G3DSA:1.10.287.950 | - | - | - | 327 | 628 | 1.4E-80 |
| Pfam | PF00015 | Methyl-accepting chemotaxis protein (MCP) signalling domain | IPR004089 | Methyl-accepting chemotaxis protein (MCP) signalling domain | 439 | 594 | 1.0E-53 |
| PRINTS | PR00260 | Bacterial chemotaxis sensory transducer signature | IPR004090 | Chemotaxis methyl-accepting receptor | 506 | 535 | 3.7E-56 |
| PRINTS | PR00260 | Bacterial chemotaxis sensory transducer signature | IPR004090 | Chemotaxis methyl-accepting receptor | 554 | 583 | 3.7E-56 |
| PRINTS | PR00260 | Bacterial chemotaxis sensory transducer signature | IPR004090 | Chemotaxis methyl-accepting receptor | 477 | 504 | 3.7E-56 |
| Gene3D | G3DSA:1.20.120.1530 | - | - | - | 1 | 156 | 2.0E-34 |
| Pfam | PF18947 | HAMP domain | IPR003660 | HAMP domain | 312 | 372 | 3.3E-9 |
| Coils | Coil | Coil | - | - | 583 | 603 | - |
| CDD | cd11386 | MCP_signal | - | - | 406 | 597 | 8.4347E-56 |
| SMART | SM00304 | HAMP_11 | IPR003660 | HAMP domain | 8 | 60 | 21.0 |
| SUPERFAMILY | SSF58104 | Methyl-accepting chemotaxis protein (MCP) signaling domain | - | - | 346 | 627 | 9.55E-74 |
| SMART | SM00304 | HAMP_11 | IPR003660 | HAMP domain | 326 | 378 | 0.81 |
| Pfam | PF18575 | HAMP N-terminal domain 3 | IPR041395 | HAMP N-terminal domain 3 | 114 | 156 | 1.4E-18 |
| PANTHER | PTHR43531 | PROTEIN ICFG | - | - | 105 | 664 | 6.6E-128 |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | - | - | 164 | 282 | 2.2E-39 |
| SMART | SM00283 | MA_2 | IPR004089 | Methyl-accepting chemotaxis protein (MCP) signalling domain | 379 | 626 | 8.8E-91 |
| Coils | Coil | Coil | - | - | 48 | 68 | - |
| PRINTS | PR00260 | Bacterial chemotaxis sensory transducer signature | IPR004090 | Chemotaxis methyl-accepting receptor | 400 | 429 | 3.7E-56 |
| FunFam | G3DSA:1.10.287.950:FF:000002 | Methyl-accepting chemotaxis protein | - | - | 404 | 629 | 7.4E-119 |
| CDD | cd17528 | HAMP_III | - | - | 112 | 155 | 1.80112E-15 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.