Pseudomonas denitrificans ATCC 13867, H681_02155

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00862
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00862
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0000160 phosphorelay signal transduction system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00862
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pdr02020 Two-component system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF46894 C-terminal effector domain of the bipartite response regulators IPR016032 Signal transduction response regulator, C-terminal effector 132 224 5.1E-21
CDD cd17574 REC_OmpR - - 5 102 2.60006E-47
CDD cd00383 trans_reg_C IPR001867 OmpR/PhoB-type DNA-binding domain 134 221 3.47652E-26
SMART SM00862 Trans_reg_C_3 IPR001867 OmpR/PhoB-type DNA-binding domain 147 223 5.8E-21
SUPERFAMILY SSF52172 CheY-like IPR011006 CheY-like superfamily 1 126 1.85E-37
FunFam G3DSA:3.40.50.2300:FF:000021 Two-component system response regulator KdpE - - 1 80 5.9E-27
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 119 226 1.2E-24
Gene3D G3DSA:6.10.250.690 - - - 81 118 7.4E-18
SMART SM00448 REC_2 IPR001789 Signal transduction response regulator, receiver domain 2 112 1.5E-39
Pfam PF00072 Response regulator receiver domain IPR001789 Signal transduction response regulator, receiver domain 4 112 6.6E-25
PANTHER PTHR48111 REGULATOR OF RPOS IPR039420 Transcriptional regulatory protein WalR-like 1 223 2.1E-50
Pfam PF00486 Transcriptional regulatory protein, C terminal IPR001867 OmpR/PhoB-type DNA-binding domain 147 222 1.1E-20
Gene3D G3DSA:3.40.50.2300 - - - 1 80 2.1E-19

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.