Pseudomonas denitrificans ATCC 13867, H681_07910
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Biological Process | GO:0015969 | guanosine tetraphosphate metabolic process |
Inferred from Sequence Model
Term mapped from: InterPro:PF04607
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | pdr00230 | Purine metabolism | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Pfam | PF04607 | Region found in RelA / SpoT proteins | IPR007685 | RelA/SpoT | 263 | 371 | 8.5E-38 |
| Pfam | PF19296 | RelA/SpoT, AH and RIS domains | IPR045600 | RelA/SpoT, AH and RIS domains | 494 | 639 | 5.6E-7 |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | IPR043519 | Nucleotidyltransferase superfamily | 220 | 353 | 1.9E-49 |
| Pfam | PF13328 | HD domain | - | - | 40 | 203 | 6.5E-45 |
| FunFam | G3DSA:3.30.460.10:FF:000001 | GTP pyrophosphokinase RelA | - | - | 220 | 353 | 5.8E-59 |
| SMART | SM00954 | RelA_SpoT_2 | IPR007685 | RelA/SpoT | 263 | 373 | 3.9E-66 |
| SUPERFAMILY | SSF81271 | TGS-like | IPR012676 | TGS-like | 408 | 476 | 5.01E-22 |
| CDD | cd04876 | ACT_RelA-SpoT | - | - | 673 | 744 | 1.01548E-21 |
| FunFam | G3DSA:3.10.20.30:FF:000002 | GTP pyrophosphokinase (RelA/SpoT) | - | - | 410 | 483 | 1.0E-31 |
| Gene3D | G3DSA:3.10.20.30 | - | IPR012675 | Beta-grasp domain superfamily | 410 | 484 | 1.6E-31 |
| Pfam | PF13291 | ACT domain | IPR002912 | ACT domain | 668 | 744 | 6.2E-18 |
| SUPERFAMILY | SSF109604 | HD-domain/PDEase-like | - | - | 18 | 219 | 2.76E-49 |
| Gene3D | G3DSA:1.10.3210.10 | Hypothetical protein af1432 | - | - | 12 | 219 | 6.1E-45 |
| CDD | cd05399 | NT_Rel-Spo_like | IPR007685 | RelA/SpoT | 238 | 361 | 1.55192E-38 |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | IPR043519 | Nucleotidyltransferase superfamily | 208 | 421 | 1.03E-63 |
| PANTHER | PTHR21262 | GUANOSINE-3',5'-BIS DIPHOSPHATE 3'-PYROPHOSPHOHYDROLASE | - | - | 18 | 744 | 0.0 |
| Pfam | PF02824 | TGS domain | IPR004095 | TGS | 417 | 476 | 1.4E-21 |
| SUPERFAMILY | SSF55021 | ACT-like | IPR045865 | ACT-like domain | 668 | 744 | 1.96E-14 |
| NCBIfam | TIGR00691 | JCVI: RelA/SpoT family protein | IPR004811 | RelA/SpoT family | 70 | 743 | 0.0 |
| CDD | cd01668 | TGS_RSH | IPR033655 | RelA/SpoT, TGS domain | 418 | 476 | 8.01638E-34 |
| Gene3D | G3DSA:3.30.70.260 | - | - | - | 667 | 748 | 6.7E-18 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.