Pseudomonas aeruginosa PACS2, A0K_RS26105

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0000976 transcription regulatory region sequence-specific DNA binding
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA4778
 ECO:0000249
sequence similarity evidence used in automatic assertion		 20233934
Biological Process GO:0045893 positive regulation of transcription, DNA-templated
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA4778
 ECO:0000249
sequence similarity evidence used in automatic assertion		 20233934
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR30204
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00040
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00040
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0045893 positive regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02044
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005507 copper ion binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02044
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other PACS2 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Coils Coil Coil - - 88 111 -
SMART SM00422 merrmega3 IPR000551 MerR-type HTH domain 1 70 1.0E-32
Gene3D G3DSA:1.10.1660.10 - - - 1 125 1.3E-37
PANTHER PTHR30204 REDOX-CYCLING DRUG-SENSING TRANSCRIPTIONAL ACTIVATOR SOXR IPR047057 MerR transcriptional regulator 1 113 1.1E-26
CDD cd01108 HTH_CueR IPR011789 Cu(I)-responsive transcriptional regulator 1 127 1.09218E-77
Pfam PF00376 MerR family regulatory protein IPR000551 MerR-type HTH domain 2 39 5.0E-16
PRINTS PR00040 MerR bacterial regulatory protein HTH signature IPR000551 MerR-type HTH domain 37 57 1.0E-7
PRINTS PR00040 MerR bacterial regulatory protein HTH signature IPR000551 MerR-type HTH domain 13 26 1.0E-7
PRINTS PR00040 MerR bacterial regulatory protein HTH signature IPR000551 MerR-type HTH domain 2 13 1.0E-7
Pfam PF09278 MerR, DNA binding IPR015358 Transcription regulator MerR, DNA binding 44 108 1.0E-20
NCBIfam TIGR02044 JCVI: Cu(I)-responsive transcriptional regulator IPR011789 Cu(I)-responsive transcriptional regulator 1 126 9.2E-53
SUPERFAMILY SSF46955 Putative DNA-binding domain IPR009061 Putative DNA-binding domain superfamily 1 126 5.13E-40

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.