Pseudomonas aeruginosa PACS2, A0K_RS29685

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0009103 lipopolysaccharide biosynthetic process
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA5453
ECO:0000249
sequence similarity evidence used in automatic assertion
8548534
Molecular Function GO:0008446 GDP-mannose 4,6-dehydratase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01472
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0019673 GDP-mannose metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01472
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Cell wall / LPS / capsule Other PACS2 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Hamap MF_00955 GDP-mannose 4,6-dehydratase [gmd]. IPR006368 GDP-mannose 4,6-dehydratase 3 322 53.111
TIGRFAM TIGR01472 gmd: GDP-mannose 4,6-dehydratase IPR006368 GDP-mannose 4,6-dehydratase 4 319 2.3E-127
Pfam PF16363 GDP-mannose 4,6 dehydratase IPR016040 NAD(P)-binding domain 6 312 1.2E-123
Gene3D G3DSA:3.90.25.10 186 317 0.0
CDD cd05260 GDP_MD_SDR_e 5 318 3.79146E-178
SUPERFAMILY SSF51735 IPR036291 NAD(P)-binding domain superfamily 3 319 9.68E-75
Gene3D G3DSA:3.40.50.720 5 303 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.