Pseudomonas fluorescens Pf0-1, Pfl01_1018

Gene Feature Overview

Strain	Pseudomonas fluorescens Pf0-1 GCF_000012445.1|latest
Locus Tag	Pfl01_1018
Name
Replicon	chromosome
Genomic location	1182821 - 1184197 (+ strand)

Cross-References

RefSeq	YP_346750.1
GI	77457245
Entrez	3716020
INSDC	ABA72761.1
NCBI Locus Tag	Pfl01_1018
UniParc	UPI0000388454
UniProtKB Acc	Q3KHJ5
UniProtKB ID	Q3KHJ5_PSEPF
UniRef100	UniRef100_Q3KHJ5
UniRef50	UniRef50_P0AGD9
UniRef90	UniRef90_Q4KHQ9

Product

Feature Type	CDS
Coding Frame	1
Product Name	signal recognition particle subunit FFH/SRP54 (srp54)
Synonyms
Evidence for Translation
Charge (pH 7)	12.23
Kyte-Doolittle Hydrophobicity Value	-0.168
Molecular Weight (kDa)	49360.3
Isoelectric Point (pI)	10.23

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Analysis not done

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG001936 (537 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: Pfl01_1018 Search term: signal recognition particle subunit FFH/SRP54 (srp54)

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000504412 signal recognition particle 54 [Source:HGNC Symbol;Acc:HGNC:11301] E-value: 1.4e-40 Percent Identity: 34.7
Ensembl 110, assembly GRCh38.p14	ENSP00000451647 signal recognition particle 54 [Source:HGNC Symbol;Acc:HGNC:11301] E-value: 1.4e-40 Percent Identity: 34.7

References