Pseudomonas fluorescens Pf0-1, Pfl01_1420
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas fluorescens Pf0-1
GCF_000012445.1|latest |
| Locus Tag |
Pfl01_1420
|
| Name |
|
| Replicon | chromosome |
| Genomic location | 1592406 - 1596317 (+ strand) |
Cross-References
| RefSeq | YP_347152.1 |
| GI | 77457647 |
| Entrez | 3717176 |
| NCBI Locus Tag | Pfl01_1420 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
ATP-dependent helicase HrpA
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | 9.83 |
| Kyte-Doolittle Hydrophobicity Value | -0.387 |
| Molecular Weight (kDa) | 147840.3 |
| Isoelectric Point (pI) | 8.17 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
Pathogen Association Analysis
| Results | Analysis not done |
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG002319 (536 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: Pfl01_1420
Search term: ATP-dependent helicase HrpA
|
Human Homologs
|
Ensembl
110, assembly
GRCh38.p14
|
DEAH-box helicase 16 [Source:HGNC Symbol;Acc:HGNC:2739]
E-value:
1.5e-116
Percent Identity:
37.4
|
|
Ensembl
110, assembly
GRCh38.p14
|
DEAH-box helicase 16 [Source:HGNC Symbol;Acc:HGNC:2739]
E-value:
1.5e-116
Percent Identity:
37.4
|
|
Ensembl
110, assembly
GRCh38.p14
|
DEAH-box helicase 16 [Source:HGNC Symbol;Acc:HGNC:2739]
E-value:
1.5e-116
Percent Identity:
37.4
|
|
Ensembl
110, assembly
GRCh38.p14
|
DEAH-box helicase 16 [Source:HGNC Symbol;Acc:HGNC:2739]
E-value:
1.5e-116
Percent Identity:
37.4
|
|
Ensembl
110, assembly
GRCh38.p14
|
DEAH-box helicase 16 [Source:HGNC Symbol;Acc:HGNC:2739]
E-value:
1.5e-116
Percent Identity:
37.4
|
|
Ensembl
110, assembly
GRCh38.p14
|
DEAH-box helicase 16 [Source:HGNC Symbol;Acc:HGNC:2739]
E-value:
1.5e-116
Percent Identity:
37.4
|
References
No references are associated with this feature.