Pseudomonas fluorescens Pf0-1, Pfl01_3879 (fadB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas fluorescens Pf0-1
GCF_000012445.1|latest
Locus Tag
Pfl01_3879
Name
fadB
Replicon chromosome
Genomic location 4384990 - 4387137 (- strand)

Cross-References

RefSeq YP_349607.1
GI 77460100
EC Number 1.1.1.35
EC Number 4.2.1.17
Entrez 3712525
INSDC ABA75616.1
NCBI Locus Tag Pfl01_3879
UniParc UPI00003C7919
UniProtKB Acc Q3K9D8
UniProtKB ID FADB_PSEPF
UniRef100 UniRef100_Q3K9D8
UniRef50 UniRef50_P28793
UniRef90 UniRef90_Q4KFC4

Product

Feature Type CDS
Coding Frame 1
Product Name
multifunctional fatty acid oxidation complex subunit alpha
Synonyms
Evidence for Translation
Charge (pH 7) -4.39
Kyte-Doolittle Hydrophobicity Value -0.010
Molecular Weight (kDa) 77388.0
Isoelectric Point (pI) 6.06

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
2D3T LYASE, OXIDOREDUCTASE/TRANSFERASE 10/01/05 Fatty Acid beta-oxidation multienzyme complex from Pseudomonas Fragi, Form V Pseudomonas fragi 3.4 X-RAY DIFFRACTION 93.7
1WDK LYASE,OXIDOREDUCTASE/TRANSFERASE 05/17/04 fatty acid beta-oxidation multienzyme complex from Pseudomonas fragi, form I (native2) Pseudomonas fragi 2.5 X-RAY DIFFRACTION 93.7
1WDM LYASE,OXIDOREDUCTASE/TRANSFERASE 05/17/04 fatty acid beta-oxidation multienzyme complex from Pseudomonas fragi, form I (native3) Pseudomonas fragi 3.8 X-RAY DIFFRACTION 93.7
1WDL LYASE,OXIDOREDUCTASE/TRANSFERASE 05/17/04 fatty acid beta-oxidation multienzyme complex from Pseudomonas fragi, form II (native4) Pseudomonas fragi 3.5 X-RAY DIFFRACTION 93.7

Pathogen Association Analysis

Results Analysis not done

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG002568 (536 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: Pfl01_3879
Search term: fadB

Human Homologs

Ensembl 110, assembly GRCh38.p14
hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha [Source:HGNC Symbol;Acc:HGNC:4801]
E-value: 1.1e-97
Percent Identity: 33.2

References

No references are associated with this feature.