Strain |
Pseudomonas fluorescens Pf0-1
GCF_000012445.1|latest |
Locus Tag |
Pfl01_5080
|
Name |
rpsJ
|
Replicon | chromosome |
Genomic location | 5705332 - 5705643 (- strand) |
RefSeq | YP_350808.1 |
GI | 77461301 |
Entrez | 3715942 |
INSDC | ABA76817.1 |
NCBI Locus Tag | Pfl01_5080 |
UniParc | UPI000000EB33 |
UniProtKB Acc | Q3K5Y7 |
UniProtKB ID | RS10_PSEPF |
UniRef100 | UniRef100_Q4K532 |
UniRef50 | UniRef50_Q48D35 |
UniRef90 | UniRef90_Q48D35 |
Feature Type | CDS |
Coding Frame | 1 |
Product Name |
30S ribosomal protein S10
|
Synonyms | |
Evidence for Translation | |
Charge (pH 7) | 4.71 |
Kyte-Doolittle Hydrophobicity Value | -0.491 |
Molecular Weight (kDa) | 11.8 |
Isoelectric Point (pI) | 10.47 |
Individual Mappings | |
Additional evidence for subcellular localization |
Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
6SPF | RIBOSOME | 09/01/19 | Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate | Pseudomonas aeruginosa | 2.89 | ELECTRON MICROSCOPY | 99.0 |
7UNR | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-A) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.9 | ELECTRON MICROSCOPY | 99.0 |
6SPC | RIBOSOME | 09/01/19 | Pseudomonas aeruginosa 30s ribosome from an aminoglycoside resistant clinical isolate | Pseudomonas aeruginosa | 2.95 | ELECTRON MICROSCOPY | 99.0 |
6SPE | RIBOSOME | 09/01/19 | Pseudomonas aeruginosa 30s ribosome from a clinical isolate | Pseudomonas aeruginosa | 3.6 | ELECTRON MICROSCOPY | 99.0 |
7UNV | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.7 | ELECTRON MICROSCOPY | 99.0 |
6SPG | RIBOSOME | 09/01/19 | Pseudomonas aeruginosa 70s ribosome from a clinical isolate | Pseudomonas aeruginosa | 3.34 | ELECTRON MICROSCOPY | 99.0 |
7UNU | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-B) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.9 | ELECTRON MICROSCOPY | 99.0 |
7UNW | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-B) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.6 | ELECTRON MICROSCOPY | 99.0 |
Identified by Diamond using e-value cutoff of 0.0001 and returning alignments that span 100% of the query sequence and that have more than 95% identity.
Drug Name | Source Accession | Source DB | Version | Target Accession | Target Description | Percent Identity | Alignment Length | E-Value |
Nitrofurantoin | DB00698 | DrugBank | 5.1.4 | P0A7R5 | 30S ribosomal protein S10 | 89.3 | 103 | 3.7e-45 |
Results | Analysis not done |
Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
Pseudomonas Ortholog Group |
POG001446 (528 members) |
Putative Inparalogs | None Found |
STRING database | Search for predicted protein-protein interactions using:
Search term: Pfl01_5080
Search term: rpsJ
Search term: 30S ribosomal protein S10
|