Pseudomonas fluorescens Pf0-1, Pfl01_5741

Gene Feature Overview

Strain	Pseudomonas fluorescens Pf0-1 GCF_000012445.1|latest
Locus Tag	Pfl01_5741
Name
Replicon	chromosome
Genomic location	6432022 - 6433920 (- strand)

Cross-References

RefSeq	YP_351465.1
GI	77461958
Entrez	3714466
INSDC	ABA77474.1
NCBI Locus Tag	Pfl01_5741
UniParc	UPI00005C7D36
UniProtKB Acc	Q3K430
UniProtKB ID	MNMG_PSEPF
UniRef100	UniRef100_Q3K430
UniRef50	UniRef50_Q4K399
UniRef90	UniRef90_Q4K399

Product

Feature Type	CDS
Coding Frame	1
Product Name	tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
Synonyms
Evidence for Translation
Charge (pH 7)	-5.75
Kyte-Doolittle Hydrophobicity Value	-0.272
Molecular Weight (kDa)	69305.2
Isoelectric Point (pI)	6.30

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Analysis not done

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG005096 (534 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: Pfl01_5741 Search term: tRNA uridine 5-carboxymethylaminomethyl modification protein GidA

Human Homologs

Ensembl 110, assembly GRCh38.p14

ENSP00000419561 mitochondrial tRNA translation optimization 1 [Source:HGNC Symbol;Acc:HGNC:19261] E-value: 1.5e-146 Percent Identity: 46.1

References