Pseudomonas fluorescens F113, PSF113_0073 (def)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas fluorescens F113
GCF_000237065.1|latest
Locus Tag
PSF113_0073
Name
def
Replicon chromosome
Genomic location 80804 - 81310 (+ strand)

Cross-References

RefSeq YP_005205503.1
GI 378948015
Entrez 11828147
INSDC AEV60108.1
NCBI Locus Tag PSF113_0073
UniParc UPI0002041FD8
UniProtKB Acc G8PX89
UniProtKB ID G8PX89_PSEFL
UniRef100 UniRef100_A0A0D0RCR2
UniRef50 UniRef50_Q9I7A8
UniRef90 UniRef90_Q9I7A8

Product

Feature Type CDS
Coding Frame 1
Product Name
hypothetical protein
Synonyms
Evidence for Translation
Charge (pH 7) -7.13
Kyte-Doolittle Hydrophobicity Value -0.370
Molecular Weight (kDa) 19.3
Isoelectric Point (pI) 4.82

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
1N5N HYDROLASE 11/06/02 Crystal Structure of Peptide Deformylase from Pseudomonas aeruginosa Pseudomonas aeruginosa 1.8 X-RAY DIFFRACTION 91.6
1IX1 HYDROLASE 06/07/02 Crystal Structure of P.aeruginosa Peptide deformylase Complexed with Antibiotic Actinonin Pseudomonas aeruginosa 1.85 X-RAY DIFFRACTION 91.1
1S17 HYDROLASE 01/05/04 Identification of Novel Potent Bicyclic Peptide Deformylase Inhibitors Pseudomonas aeruginosa 1.95 X-RAY DIFFRACTION 91.6
1LRY HYDROLASE 05/16/02 Crystal Structure of P. aeruginosa Peptide Deformylase Complexed with Antibiotic Actinonin Pseudomonas aeruginosa 2.6 X-RAY DIFFRACTION 91.0

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 587 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000019 (537 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSF113_0073
Search term: def

Human Homologs

References

No references are associated with this feature.