Pseudomonas fluorescens F113, PSF113_1487 (srmB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas fluorescens F113
GCF_000237065.1|latest
Locus Tag
PSF113_1487
Name
srmB
Replicon chromosome
Genomic location 1715566 - 1716912 (+ strand)

Cross-References

RefSeq YP_005206906.1
GI 378949418
Entrez 11829576
INSDC AEV61511.1
NCBI Locus Tag PSF113_1487
UniParc UPI00023B4205
UniProtKB Acc G8PZI4
UniProtKB ID G8PZI4_PSEFL
UniRef100 UniRef100_G8PZI4
UniRef50 UniRef50_A0A098FQD5
UniRef90 UniRef90_Q4KGF7

Product

Feature Type CDS
Coding Frame 1
Product Name
protein SrmB
Synonyms
Evidence for Translation
Charge (pH 7) 21.64
Kyte-Doolittle Hydrophobicity Value -0.331
Molecular Weight (kDa) 49.5
Isoelectric Point (pI) 10.45

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 640 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG002174 (538 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSF113_1487
Search term: srmB
Search term: protein SrmB

Human Homologs

Ensembl 110, assembly GRCh38.p14
DEAD-box helicase 27 [Source:HGNC Symbol;Acc:HGNC:15837]
E-value: 4.5e-60
Percent Identity: 37.9

References

No references are associated with this feature.