Pseudomonas fluorescens F113, PSF113_1999 (rsmE)

Gene Feature Overview

Strain	Pseudomonas fluorescens F113 GCF_000237065.1|latest
Locus Tag	PSF113_1999
Name	rsmE
Replicon	chromosome
Genomic location	2348509 - 2348703 (- strand)

Cross-References

RefSeq	YP_005207406.1
GI	378949918
Entrez	11830091
INSDC	AEV62011.1
NCBI Locus Tag	PSF113_1999
UniParc	UPI00005C7A6C
UniProtKB Acc	G8Q6D7
UniProtKB ID	G8Q6D7_PSEFL
UniRef100	UniRef100_A8IKR8
UniRef50	UniRef50_A0LC90
UniRef90	UniRef90_K9NKH2

Product

Feature Type	CDS
Coding Frame	1
Product Name	protein RsmE
Synonyms
Evidence for Translation
Charge (pH 7)	1.22
Kyte-Doolittle Hydrophobicity Value	-0.106
Molecular Weight (kDa)	6.9
Isoelectric Point (pI)	9.22

Subcellular localization

Individual Mappings	Localization Confidence PMID Unknown Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession	Header	Accession Date	Compound	Source	Resolution	Method	Percent Identity
2MFC	TRANSLATION/RNA	10/10/13	Csr/Rsm protein-RNA recognition - A molecular affinity ruler: RsmZ(SL1)/RsmE(dimer) 2:1 complex	Pseudomonas fluorescens; SYNTHETIC CONSTRUCT	NOT	SOLUTION NMR	95.3
2MFG	TRANSLATION/RNA	10/11/13	Csr/Rsm protein-RNA recognition - A molecular affinity ruler: RsmZ(SL4)/RsmE(dimer) 2:1 complex	Pseudomonas fluorescens; SYNTHETIC CONSTRUCT	NOT	SOLUTION NMR	95.3
2JPP	TRANSLATION/RNA	05/21/07	Structural basis of RsmA/CsrA RNA recognition: Structure of RsmE bound to the Shine-Dalgarno sequence of hcnA mRNA	Pseudomonas fluorescens; SYNTHETIC CONSTRUCT	NOT	SOLUTION NMR	95.3
2MF1	RNA BINDING PROTEIN/RNA	10/02/13	Structural basis of the non-coding RNA RsmZ acting as protein sponge: Conformer R of RsmZ(1-72)/RsmE(dimer) 1to3 complex	Pseudomonas protegens Pf-5; SYNTHETIC CONSTRUCT	NOT	SOLUTION NMR	95.3
2MFF	TRANSLATION/RNA	10/11/13	Csr/Rsm protein-RNA recognition - A molecular affinity ruler: RsmZ(SL3)/RsmE(dimer) 2:1 complex	Pseudomonas fluorescens; SYNTHETIC CONSTRUCT	NOT	SOLUTION NMR	95.3
2MFE	TRANSLATION/RNA	10/11/13	Csr/Rsm protein-RNA recognition - A molecular affinity ruler: RsmZ(SL2)/RsmE(dimer) 2:1 complex	Pseudomonas fluorescens; SYNTHETIC CONSTRUCT	NOT	SOLUTION NMR	95.3
2MF0	RNA BINDING PROTEIN/RNA	10/02/13	Structural basis of the non-coding RNA RsmZ acting as protein sponge: Conformer L of RsmZ(1-72)/RsmE(dimer) 1to3 complex	Pseudomonas protegens Pf-5; SYNTHETIC CONSTRUCT	NOT	SOLUTION NMR	95.3
2MFH	TRANSLATION/RNA	10/11/13	Csr/Rsm protein-RNA recognition - A molecular affinity ruler: RsmZ(36-44)/RsmE(dimer) 2:1 complex	Pseudomonas fluorescens; SYNTHETIC CONSTRUCT	NOT	SOLUTION NMR	95.3

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 226 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG016526 (173 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSF113_1999 Search term: rsmE Search term: protein RsmE

Human Homologs

References