Pseudomonas fluorescens F113, PSF113_2170 (cspD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas fluorescens F113
GCF_000237065.1|latest
Locus Tag
PSF113_2170
Name
cspD
Replicon chromosome
Genomic location 2544379 - 2544648 (- strand)

Cross-References

RefSeq YP_005207576.1
GI 378950088
Entrez 11830263
INSDC AEV62181.1
NCBI Locus Tag PSF113_2170
UniParc UPI00023B4592
UniProtKB Acc G8Q8P3
UniProtKB ID G8Q8P3_PSEFL
UniRef100 UniRef100_G8Q8P3
UniRef50 UniRef50_P0A970
UniRef90 UniRef90_G8Q8P3

Product

Feature Type CDS
Coding Frame 1
Product Name
protein CspD
Synonyms
Evidence for Translation
Charge (pH 7) 1.70
Kyte-Doolittle Hydrophobicity Value -0.081
Molecular Weight (kDa) 9771.2
Isoelectric Point (pI) 8.97

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 495 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG002930 (535 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSF113_2170
Search term: cspD
Search term: protein CspD

Human Homologs

Ensembl 110, assembly GRCh38.p14
lin-28 homolog B [Source:HGNC Symbol;Acc:HGNC:32207]
E-value: 1.8e-08
Percent Identity: 37.0
Ensembl 110, assembly GRCh38.p14
lin-28 homolog B [Source:HGNC Symbol;Acc:HGNC:32207]
E-value: 1.8e-08
Percent Identity: 37.0
Ensembl 110, assembly GRCh38.p14
lin-28 homolog B [Source:HGNC Symbol;Acc:HGNC:32207]
E-value: 1.8e-08
Percent Identity: 37.0

References

No references are associated with this feature.