Pseudomonas fluorescens F113, PSF113_3476 (ligR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas fluorescens F113
GCF_000237065.1|latest
Locus Tag
PSF113_3476
Name
ligR
Replicon chromosome
Genomic location 4087478 - 4088362 (- strand)

Cross-References

RefSeq YP_005208873.1
GI 378951385
Entrez 11831572
INSDC AEV63478.1
NCBI Locus Tag PSF113_3476
UniParc UPI00023B3C00
UniProtKB Acc G8Q9U1
UniProtKB ID G8Q9U1_PSEFL
UniRef100 UniRef100_G8Q9U1
UniRef50 UniRef50_G8Q9U1
UniRef90 UniRef90_G8Q9U1

Product

Feature Type CDS
Coding Frame 1
Product Name
protein LigR
Synonyms
Evidence for Translation
Charge (pH 7) 3.77
Kyte-Doolittle Hydrophobicity Value 0.050
Molecular Weight (kDa) 32676.6
Isoelectric Point (pI) 8.06

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 536 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG023491 (4 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSF113_3476
Search term: ligR
Search term: protein LigR

Human Homologs

References

No references are associated with this feature.