Pseudomonas fluorescens F113, PSF113_4888 (slyD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas fluorescens F113
GCF_000237065.1|latest
Locus Tag
PSF113_4888
Name
slyD
Replicon chromosome
Genomic location 5680119 - 5680604 (- strand)

Cross-References

RefSeq YP_005210272.1
GI 378952784
EC Number 5.2.1.8
Entrez 11832992
INSDC AEV64877.1
NCBI Locus Tag PSF113_4888
UniParc UPI0002041452
UniProtKB Acc G8QBS9
UniProtKB ID G8QBS9_PSEFL
UniRef100 UniRef100_A0A0D0T5M6
UniRef50 UniRef50_Q4KI62
UniRef90 UniRef90_Q4KI62

Product

Feature Type CDS
Coding Frame 1
Product Name
SlyD protein
Synonyms
Evidence for Translation
Charge (pH 7) -16.84
Kyte-Doolittle Hydrophobicity Value -0.231
Molecular Weight (kDa) 17.1
Isoelectric Point (pI) 4.27

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 356 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000805 (534 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSF113_4888
Search term: slyD
Search term: SlyD protein

Human Homologs

References

No references are associated with this feature.