Pseudomonas fluorescens F113, PSF113_5123
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas fluorescens F113
GCF_000237065.1|latest |
| Locus Tag |
PSF113_5123
|
| Name |
|
| Replicon | chromosome |
| Genomic location | 5935558 - 5935731 (+ strand) |
Cross-References
| RefSeq | YP_005210497.1 |
| GI | 378953009 |
| Entrez | 11833229 |
| NCBI Locus Tag | PSF113_5123 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
transposase subunit b
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | 2.22 |
| Kyte-Doolittle Hydrophobicity Value | -0.911 |
| Molecular Weight (kDa) | 6913.7 |
| Isoelectric Point (pI) | 9.43 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
Pathogen Association Analysis
| Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 49 genera
|
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG030558 (11 members) |
| Putative Inparalogs |
4 predicted inparalogs transposase subunit b (PSF113_4042) 100.0% identity transposase subunit b (PSF113_3503) 100.0% identity transposase subunit b (PSF113_3150) 100.0% identity transposase subunit b (PSF113_1804) 100.0% identity |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: PSF113_5123
Search term: transposase subunit b
|
Human Homologs
References
No references are associated with this feature.