Pseudomonas fluorescens F113, PSF113_5295 (rplD)

Gene Feature Overview

Strain	Pseudomonas fluorescens F113 GCF_000237065.1|latest
Locus Tag	PSF113_5295
Name	rplD
Replicon	chromosome
Genomic location	6127676 - 6128278 (- strand)

Cross-References

RefSeq	YP_005210670.1
GI	378953182
Entrez	11833402
INSDC	AEV65275.1
NCBI Locus Tag	PSF113_5295
UniParc	UPI0002040D3D
UniProtKB Acc	G8Q066
UniProtKB ID	G8Q066_PSEFL
UniRef100	UniRef100_A0A0D0R5C5
UniRef50	UniRef50_P49226
UniRef90	UniRef90_Q889X0

Product

Feature Type	CDS
Coding Frame	1
Product Name	protein RplD
Synonyms
Evidence for Translation
Charge (pH 7)	7.71
Kyte-Doolittle Hydrophobicity Value	-0.310
Molecular Weight (kDa)	21.9
Isoelectric Point (pI)	10.34

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 591 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG001448 (528 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSF113_5295 Search term: rplD Search term: protein RplD

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000306902 mitochondrial ribosomal protein L4 [Source:HGNC Symbol;Acc:HGNC:14276] E-value: 3.8e-11 Percent Identity: 27.4
Ensembl 110, assembly GRCh38.p14	ENSP00000253099 mitochondrial ribosomal protein L4 [Source:HGNC Symbol;Acc:HGNC:14276] E-value: 3.8e-11 Percent Identity: 27.4
Ensembl 110, assembly GRCh38.p14	ENSP00000468569 mitochondrial ribosomal protein L4 [Source:HGNC Symbol;Acc:HGNC:14276] E-value: 3.8e-11 Percent Identity: 27.4

References