Pseudomonas fluorescens F113, PSF113_5296 (rplC)

Gene Feature Overview

Strain	Pseudomonas fluorescens F113 GCF_000237065.1|latest
Locus Tag	PSF113_5296
Name	rplC
Replicon	chromosome
Genomic location	6128291 - 6128926 (- strand)

Cross-References

RefSeq	YP_005210671.1
GI	378953183
Entrez	11833403
INSDC	AEV65276.1
NCBI Locus Tag	PSF113_5296
UniParc	UPI0002040D3E
UniProtKB Acc	G8Q067
UniProtKB ID	G8Q067_PSEFL
UniRef100	UniRef100_A0A0D0PLE8
UniRef50	UniRef50_A2SLF7
UniRef90	UniRef90_Q889X1

Product

Feature Type	CDS
Coding Frame	1
Product Name	protein RplC
Synonyms
Evidence for Translation
Charge (pH 7)	9.90
Kyte-Doolittle Hydrophobicity Value	-0.294
Molecular Weight (kDa)	22.6
Isoelectric Point (pI)	10.60

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 636 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG001447 (534 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSF113_5296 Search term: rplC Search term: protein RplC

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000398536 mitochondrial ribosomal protein L3 [Source:HGNC Symbol;Acc:HGNC:10379] E-value: 4.2e-24 Percent Identity: 33.2
Ensembl 110, assembly GRCh38.p14	ENSP00000264995 mitochondrial ribosomal protein L3 [Source:HGNC Symbol;Acc:HGNC:10379] E-value: 4.2e-24 Percent Identity: 33.2
Ensembl 110, assembly GRCh38.p14	ENSP00000424107 mitochondrial ribosomal protein L3 [Source:HGNC Symbol;Acc:HGNC:10379] E-value: 4.2e-24 Percent Identity: 33.2

References