Pseudomonas fluorescens F113, PSF113_5300 (rpsL)

Gene Feature Overview

Strain	Pseudomonas fluorescens F113 GCF_000237065.1|latest
Locus Tag	PSF113_5300
Name	rpsL
Replicon	chromosome
Genomic location	6133408 - 6133779 (- strand)

Cross-References

RefSeq	YP_005210676.1
GI	378953188
Entrez	11833408
INSDC	AEV65281.1
NCBI Locus Tag	PSF113_5300
UniParc	UPI00003C7B81
UniProtKB Acc	G8Q072
UniProtKB ID	G8Q072_PSEFL
UniRef100	UniRef100_Q4K528
UniRef50	UniRef50_P61941
UniRef90	UniRef90_A6W397

Product

Feature Type	CDS
Coding Frame	1
Product Name	protein RpsL
Synonyms
Evidence for Translation
Charge (pH 7)	19.61
Kyte-Doolittle Hydrophobicity Value	-0.785
Molecular Weight (kDa)	13.8
Isoelectric Point (pI)	11.70

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession	Header	Accession Date	Compound	Source	Resolution	Method	Percent Identity
6SPG	RIBOSOME	09/01/19	Pseudomonas aeruginosa 70s ribosome from a clinical isolate	Pseudomonas aeruginosa	3.34	ELECTRON MICROSCOPY	95.0
6SPF	RIBOSOME	09/01/19	Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate	Pseudomonas aeruginosa	2.89	ELECTRON MICROSCOPY	95.0
7UNU	RIBOSOME	04/11/22	Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-B)	Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT	2.9	ELECTRON MICROSCOPY	95.1
7UNV	RIBOSOME	04/11/22	Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A)	Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT	2.7	ELECTRON MICROSCOPY	95.1
7UNW	RIBOSOME	04/11/22	Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-B)	Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT	2.6	ELECTRON MICROSCOPY	95.1
6SPC	RIBOSOME	09/01/19	Pseudomonas aeruginosa 30s ribosome from an aminoglycoside resistant clinical isolate	Pseudomonas aeruginosa	2.95	ELECTRON MICROSCOPY	95.0
7UNR	RIBOSOME	04/11/22	Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-A)	Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT	2.9	ELECTRON MICROSCOPY	95.1
6SPE	RIBOSOME	09/01/19	Pseudomonas aeruginosa 30s ribosome from a clinical isolate	Pseudomonas aeruginosa	3.6	ELECTRON MICROSCOPY	95.0

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 661 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG001443 (531 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSF113_5300 Search term: rpsL Search term: protein RpsL

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000384579 mitochondrial ribosomal protein S12 [Source:HGNC Symbol;Acc:HGNC:10380] E-value: 7.3e-21 Percent Identity: 50.5
Ensembl 110, assembly GRCh38.p14	ENSP00000489374 mitochondrial ribosomal protein S12 [Source:HGNC Symbol;Acc:HGNC:10380] E-value: 7.3e-21 Percent Identity: 50.5
Ensembl 110, assembly GRCh38.p14	ENSP00000384952 mitochondrial ribosomal protein S12 [Source:HGNC Symbol;Acc:HGNC:10380] E-value: 7.3e-21 Percent Identity: 50.5
Ensembl 110, assembly GRCh38.p14	ENSP00000308845 mitochondrial ribosomal protein S12 [Source:HGNC Symbol;Acc:HGNC:10380] E-value: 7.3e-21 Percent Identity: 50.5
Ensembl 110, assembly GRCh38.p14	ENSP00000489467 mitochondrial ribosomal protein S12 [Source:HGNC Symbol;Acc:HGNC:10380] E-value: 7.3e-21 Percent Identity: 50.5
Ensembl 110, assembly GRCh38.p14	ENSP00000488926 mitochondrial ribosomal protein S12 [Source:HGNC Symbol;Acc:HGNC:10380] E-value: 7.3e-21 Percent Identity: 50.5

References