Pseudomonas fluorescens F113, PSF113_5555 (rpoH)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas fluorescens F113
GCF_000237065.1|latest
Locus Tag
PSF113_5555
Name
rpoH
Replicon chromosome
Genomic location 6421808 - 6422662 (- strand)

Cross-References

RefSeq YP_005210922.1
GI 378953434
Entrez 11833674
INSDC AEV65527.1
NCBI Locus Tag PSF113_5555
UniParc UPI0002041881
UniProtKB Acc G8Q3N1
UniProtKB ID G8Q3N1_PSEFL
UniRef100 UniRef100_A0A0D0MR43
UniRef50 UniRef50_P11539
UniRef90 UniRef90_P42378

Product

Feature Type CDS
Coding Frame 1
Product Name
protein RpoH
Synonyms
Evidence for Translation
Charge (pH 7) -5.58
Kyte-Doolittle Hydrophobicity Value -0.473
Molecular Weight (kDa) 32.6
Isoelectric Point (pI) 6.01

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 591 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000367 (535 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSF113_5555
Search term: rpoH
Search term: protein RpoH

Human Homologs

References

No references are associated with this feature.