Pseudomonas fluorescens SBW25, PFLU0882 (rpoN)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas fluorescens SBW25
GCF_000009225.2|latest
Locus Tag
PFLU0882
Name
rpoN
Replicon chromosome
Genomic location 991343 - 992836 (- strand)

Cross-References

RefSeq YP_002870545.1
GI 229588426
Entrez 7820382
INSDC CAY47149.1
UniParc UPI00019D9D56
UniProtKB Acc C3K842
UniProtKB ID C3K842_PSEFS
UniRef100 UniRef100_C3K842
UniRef50 UniRef50_P0A171
UniRef90 UniRef90_Q9FDD8

Product

Feature Type CDS
Coding Frame 1
Product Name
RNA polymerase factor sigma-54
Synonyms
Evidence for Translation
Charge (pH 7) -30.36
Kyte-Doolittle Hydrophobicity Value -0.515
Molecular Weight (kDa) 56.6
Isoelectric Point (pI) 4.39

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 395 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004051 (536 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFLU0882
Search term: rpoN

Human Homologs

References

No references are associated with this feature.