Pseudomonas fluorescens SBW25, PFLU1556 (topA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas fluorescens SBW25
GCF_000009225.2|latest
Locus Tag
PFLU1556
Name
topA
Replicon chromosome
Genomic location 1704534 - 1707155 (+ strand)

Cross-References

RefSeq YP_002871198.1
GI 229589079
EC Number 5.99.1.2
Entrez 7819520
INSDC CAY47805.1
UniParc UPI00019D9EA6
UniProtKB Acc C3K616
UniProtKB ID C3K616_PSEFS
UniRef100 UniRef100_C3K616
UniRef50 UniRef50_Q9HZJ5
UniRef90 UniRef90_Q4KFC2

Product

Feature Type CDS
Coding Frame 1
Product Name
DNA topoisomerase I
Synonyms
Evidence for Translation
Charge (pH 7) 11.49
Kyte-Doolittle Hydrophobicity Value -0.581
Molecular Weight (kDa) 97.3
Isoelectric Point (pI) 8.50

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 665 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG002571 (536 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFLU1556
Search term: topA

Human Homologs

References

No references are associated with this feature.