Pseudomonas fluorescens SBW25, PFLU1822 (lpd)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas fluorescens SBW25
GCF_000009225.2|latest
Locus Tag
PFLU1822
Name
lpd
Replicon chromosome
Genomic location 1988497 - 1989933 (+ strand)

Cross-References

RefSeq YP_002871458.1
GI 229589339
EC Number 1.8.1.4
Entrez 7822188
INSDC CAY48069.1
UniParc UPI00019DA2F2
UniProtKB Acc C3K6M9
UniProtKB ID C3K6M9_PSEFS
UniRef100 UniRef100_C3K6M9
UniRef50 UniRef50_Q2SVH8
UniRef90 UniRef90_C3K6M9

Product

Feature Type CDS
Coding Frame 1
Product Name
dihydrolipoamide dehydrogenase
Synonyms
Evidence for Translation
Charge (pH 7) -4.98
Kyte-Doolittle Hydrophobicity Value 0.120
Molecular Weight (kDa) 50.0
Isoelectric Point (pI) 6.33

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
6AWA OXIDOREDUCTASE 09/05/17 1.83 Angstrom Resolution Crystal Structure of Dihydrolipoyl Dehydrogenase from Pseudomonas putida in Complex with FAD and Adenosine-5'-monophosphate. Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440) 1.83 X-RAY DIFFRACTION 90.0
5TR3 HYDROLASE 10/25/16 2.5 Angstrom Resolution Crystal Structure of Dihydrolipoyl Dehydrogenase from Pseudomonas putida in Complex with FAD. Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440) 2.5 X-RAY DIFFRACTION 90.0

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 645 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG003776 (538 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFLU1822
Search term: lpd

Human Homologs

Ensembl 110, assembly GRCh38.p14
dihydrolipoamide dehydrogenase [Source:HGNC Symbol;Acc:HGNC:2898]
E-value: 7.0e-120
Percent Identity: 48.9
Ensembl 110, assembly GRCh38.p14
dihydrolipoamide dehydrogenase [Source:HGNC Symbol;Acc:HGNC:2898]
E-value: 7.0e-120
Percent Identity: 48.9

References

No references are associated with this feature.