Pseudomonas fluorescens SBW25, PFLU2911 (ligD)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas fluorescens SBW25
GCF_000009225.2|latest |
| Locus Tag |
PFLU2911
|
| Name |
ligD
|
| Replicon | chromosome |
| Genomic location | 3172262 - 3174778 (- strand) |
Cross-References
| RefSeq | YP_002872489.1 |
| GI | 229590370 |
| Entrez | 7818267 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
ATP-dependent DNA ligase
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | 22.07 |
| Kyte-Doolittle Hydrophobicity Value | -0.397 |
| Molecular Weight (kDa) | 92890.9 |
| Isoelectric Point (pI) | 9.94 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
Pathogen Association Analysis
| Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 288 genera
|
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG003336 (490 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: PFLU2911
Search term: ligD
Search term: ATP-dependent DNA ligase
|
Human Homologs
References
No references are associated with this feature.