Pseudomonas fluorescens SBW25, PFLU3005

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas fluorescens SBW25
GCF_000009225.2|latest
Locus Tag
PFLU3005
Name
Replicon chromosome
Genomic location 3273933 - 3275045 (- strand)

Cross-References

RefSeq YP_002872585.1
GI 229590466
Entrez 7819380
INSDC CAY49234.1
UniParc UPI00019DAB3E
UniProtKB Acc C3KA96
UniProtKB ID C3KA96_PSEFS
UniRef100 UniRef100_C3KA96
UniRef50 UniRef50_S0ACH9
UniRef90 UniRef90_C3KA96

Product

Feature Type CDS
Coding Frame 1
Product Name
histone deacetylase family protein
Synonyms
Evidence for Translation
Charge (pH 7) -5.39
Kyte-Doolittle Hydrophobicity Value 0.001
Molecular Weight (kDa) 39694.9
Isoelectric Point (pI) 6.40

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 444 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001890 (353 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFLU3005

Human Homologs

Ensembl 110, assembly GRCh38.p14
histone deacetylase 10 [Source:HGNC Symbol;Acc:HGNC:18128]
E-value: 2.3e-33
Percent Identity: 35.2

References

No references are associated with this feature.