Pseudomonas fluorescens SBW25, PFLU4540

Gene Feature Overview

Strain	Pseudomonas fluorescens SBW25 GCF_000009225.2|latest
Locus Tag	PFLU4540
Name
Replicon	chromosome
Genomic location	5005546 - 5009457 (- strand)

Cross-References

RefSeq	YP_002874069.1
GI	229591950
Entrez	7820515
INSDC	CAY51255.1
UniParc	UPI00019DA878
UniProtKB Acc	C3JYF7
UniProtKB ID	C3JYF7_PSEFS
UniRef100	UniRef100_C3JYF7
UniRef50	UniRef50_Q1I6R0
UniRef90	UniRef90_K9NPM0

Product

Feature Type	CDS
Coding Frame	1
Product Name	ATP-dependent helicase
Synonyms
Evidence for Translation
Charge (pH 7)	6.59
Kyte-Doolittle Hydrophobicity Value	-0.377
Molecular Weight (kDa)	147771.0
Isoelectric Point (pI)	7.73

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 313 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG002319 (536 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PFLU4540 Search term: ATP-dependent helicase

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000393958 DEAH-box helicase 16 [Source:HGNC Symbol;Acc:HGNC:2739] E-value: 9.8e-116 Percent Identity: 36.8
Ensembl 110, assembly GRCh38.p14	ENSP00000365625 DEAH-box helicase 16 [Source:HGNC Symbol;Acc:HGNC:2739] E-value: 9.8e-116 Percent Identity: 36.8
Ensembl 110, assembly GRCh38.p14	ENSP00000408956 DEAH-box helicase 16 [Source:HGNC Symbol;Acc:HGNC:2739] E-value: 9.8e-116 Percent Identity: 36.8
Ensembl 110, assembly GRCh38.p14	ENSP00000396193 DEAH-box helicase 16 [Source:HGNC Symbol;Acc:HGNC:2739] E-value: 9.8e-116 Percent Identity: 36.8
Ensembl 110, assembly GRCh38.p14	ENSP00000389862 DEAH-box helicase 16 [Source:HGNC Symbol;Acc:HGNC:2739] E-value: 9.8e-116 Percent Identity: 36.8
Ensembl 110, assembly GRCh38.p14	ENSP00000390938 DEAH-box helicase 16 [Source:HGNC Symbol;Acc:HGNC:2739] E-value: 9.8e-116 Percent Identity: 36.8

References