Pseudomonas fluorescens SBW25, PFLU5251 (truB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas fluorescens SBW25
GCF_000009225.2|latest
Locus Tag
PFLU5251
Name
truB
Replicon chromosome
Genomic location 5764120 - 5765037 (- strand)

Cross-References

RefSeq YP_002874753.1
GI 229592634
EC Number 4.2.1.70
Entrez 7821124
INSDC CAY52348.1
UniParc UPI00019DA92B
UniProtKB Acc C3K257
UniProtKB ID C3K257_PSEFS
UniRef100 UniRef100_C3K257
UniRef50 UniRef50_Q4KIF4
UniRef90 UniRef90_Q4KIF4

Product

Feature Type CDS
Coding Frame 1
Product Name
tRNA pseudouridine synthase B
Synonyms
Evidence for Translation
Charge (pH 7) -3.64
Kyte-Doolittle Hydrophobicity Value -0.216
Molecular Weight (kDa) 33.4
Isoelectric Point (pI) 5.99

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 658 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004387 (536 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFLU5251
Search term: truB

Human Homologs

Ensembl 110, assembly GRCh38.p14
TruB pseudouridine synthase family member 1 [Source:HGNC Symbol;Acc:HGNC:16060]
E-value: 1.4e-33
Percent Identity: 39.2

References

No references are associated with this feature.