Pseudomonas fluorescens SBW25, PFLU5353 (trmA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas fluorescens SBW25
GCF_000009225.2|latest
Locus Tag
PFLU5353
Name
trmA
Replicon chromosome
Genomic location 5883286 - 5884365 (+ strand)

Cross-References

RefSeq YP_002874852.1
GI 229592733
EC Number 2.1.1.35
Entrez 7817489
INSDC CAY52496.1
UniParc UPI00019DAFD8
UniProtKB Acc C3K2F6
UniProtKB ID TRMA_PSEFS
UniRef100 UniRef100_C3K2F6
UniRef50 UniRef50_Q4K5P2
UniRef90 UniRef90_Q4K5P2

Product

Feature Type CDS
Coding Frame 1
Product Name
tRNA (uracil-5-)-methyltransferase
Synonyms
Evidence for Translation
Charge (pH 7) -1.50
Kyte-Doolittle Hydrophobicity Value -0.377
Molecular Weight (kDa) 40892.1
Isoelectric Point (pI) 6.74

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 495 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004366 (535 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFLU5353
Search term: trmA

Human Homologs

References

No references are associated with this feature.