Pseudomonas fluorescens SBW25, PFLU5650 (soxD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas fluorescens SBW25
GCF_000009225.2|latest
Locus Tag
PFLU5650
Name
soxD
Replicon chromosome
Genomic location 6191011 - 6191313 (- strand)

Cross-References

RefSeq YP_002875144.1
GI 229593025
EC Number 1.5.3.1
Entrez 7822168
INSDC CAY52964.1
UniParc UPI00019DAE7F
UniProtKB Acc C3K398
UniProtKB ID C3K398_PSEFS
UniRef100 UniRef100_C3K398
UniRef50 UniRef50_C5B1G1
UniRef90 UniRef90_Q4K4P8

Product

Feature Type CDS
Coding Frame 1
Product Name
sarcosine oxidase subunit delta
Synonyms
Evidence for Translation
Charge (pH 7) -3.45
Kyte-Doolittle Hydrophobicity Value -0.643
Molecular Weight (kDa) 11.6
Isoelectric Point (pI) 6.13

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 73 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004971 (511 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFLU5650
Search term: soxD

Human Homologs

References

No references are associated with this feature.