Pseudomonas putida GB-1, PputGB1_0500 (rplR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas putida GB-1
GCF_000019125.1|latest
Locus Tag
PputGB1_0500
Name
rplR
Replicon chromosome
Genomic location 576134 - 576484 (+ strand)

Cross-References

RefSeq YP_001666747.1
GI 167031516
Entrez 5868246
INSDC ABY96411.1
NCBI Locus Tag PputGB1_0500
UniParc UPI000000EB43
UniProtKB Acc B0KK83
UniProtKB ID RL18_PSEPG
UniRef100 UniRef100_A5VXR3
UniRef50 UniRef50_Q9RSL2
UniRef90 UniRef90_Q4K549

Product

Feature Type CDS
Coding Frame 1
Product Name
50S ribosomal protein L18
Synonyms
Evidence for Translation
Charge (pH 7) 10.68
Kyte-Doolittle Hydrophobicity Value -0.253
Molecular Weight (kDa) 12.6
Isoelectric Point (pI) 10.88

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
6SPB RIBOSOME 09/01/19 Pseudomonas aeruginosa 50s ribosome from a clinical isolate with a mutation in uL6 Pseudomonas aeruginosa 2.82 ELECTRON MICROSCOPY 90.3
6SPF RIBOSOME 09/01/19 Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate Pseudomonas aeruginosa 2.89 ELECTRON MICROSCOPY 90.3
6SPD RIBOSOME 09/01/19 Pseudomonas aeruginosa 50s ribosome from a clinical isolate Pseudomonas aeruginosa 3.28 ELECTRON MICROSCOPY 90.3
6SPG RIBOSOME 09/01/19 Pseudomonas aeruginosa 70s ribosome from a clinical isolate Pseudomonas aeruginosa 3.34 ELECTRON MICROSCOPY 90.3

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 591 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001463 (535 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PputGB1_0500
Search term: rplR

Human Homologs

References

No references are associated with this feature.