Pseudomonas putida GB-1, PputGB1_1080

Gene Feature Overview

Strain	Pseudomonas putida GB-1 GCF_000019125.1|latest
Locus Tag	PputGB1_1080
Name
Replicon	chromosome
Genomic location	1226287 - 1227486 (- strand)

Cross-References

RefSeq	YP_001667324.1
GI	167032093
Entrez	5868839
INSDC	ABY96988.1
NCBI Locus Tag	PputGB1_1080
UniParc	UPI0000F250FA
UniProtKB Acc	B0KRJ4
UniProtKB ID	B0KRJ4_PSEPG
UniRef100	UniRef100_B0KRJ4
UniRef50	UniRef50_D8IR29
UniRef90	UniRef90_I7BWZ7

Product

Feature Type	CDS
Coding Frame	1
Product Name	L-carnitine dehydratase/bile acid-inducible protein F
Synonyms
Evidence for Translation
Charge (pH 7)	-6.57
Kyte-Doolittle Hydrophobicity Value	-0.073
Molecular Weight (kDa)	43396.4
Isoelectric Point (pI)	5.31

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 312 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG001950 (526 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PputGB1_1080 Search term: L-carnitine dehydratase/bile acid-inducible protein F

Human Homologs

Ensembl 110, assembly GRCh38.p14

ENSP00000338475 succinyl-CoA:glutarate-CoA transferase [Source:HGNC Symbol;Acc:HGNC:16001] E-value: 5.8e-51 Percent Identity: 30.1

References