Pseudomonas putida GB-1, PputGB1_2392

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas putida GB-1
GCF_000019125.1|latest
Locus Tag
PputGB1_2392
Name
Replicon chromosome
Genomic location 2677118 - 2678170 (- strand)

Cross-References

RefSeq YP_001668627.1
GI 167033396
EC Number 4.3.1.12
Entrez 5870181
NCBI Locus Tag PputGB1_2392

Product

Feature Type CDS
Coding Frame 1
Product Name
ornithine cyclodeaminase
Synonyms
Evidence for Translation
Charge (pH 7) -6.86
Kyte-Doolittle Hydrophobicity Value -0.091
Molecular Weight (kDa) 38400.4
Isoelectric Point (pI) 5.63

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
1U7H LYASE 08/03/04 Structure and a Proposed Mechanism for Ornithine Cyclodeaminase from Pseudomonas putida Pseudomonas putida 1.8 X-RAY DIFFRACTION 95.4
1X7D LYASE 08/13/04 Crystal Structure Analysis of Ornithine Cyclodeaminase Complexed with NAD and ornithine to 1.6 Angstroms Pseudomonas putida 1.6 X-RAY DIFFRACTION 95.4

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 244 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG016367 (58 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PputGB1_2392

Human Homologs

References

No references are associated with this feature.