Pseudomonas putida GB-1, PputGB1_3615
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas putida GB-1
GCF_000019125.1|latest |
| Locus Tag |
PputGB1_3615
|
| Name |
|
| Replicon | chromosome |
| Genomic location | 4015767 - 4016021 (+ strand) |
Cross-References
| RefSeq | YP_001669842.1 |
| GI | 167034611 |
| Entrez | 5871407 |
| NCBI Locus Tag | PputGB1_3615 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
cold-shock DNA-binding domain-containing protein
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | 1.46 |
| Kyte-Doolittle Hydrophobicity Value | -0.232 |
| Molecular Weight (kDa) | 8817.9 |
| Isoelectric Point (pI) | 8.96 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
Pathogen Association Analysis
| Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 500 genera
|
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG002930 (535 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: PputGB1_3615
Search term: cold-shock DNA-binding domain-containing protein
|
Human Homologs
|
Ensembl
110, assembly
GRCh38.p14
|
lin-28 homolog A [Source:HGNC Symbol;Acc:HGNC:15986]
E-value:
9.1e-07
Percent Identity:
33.8
|
|
Ensembl
110, assembly
GRCh38.p14
|
lin-28 homolog A [Source:HGNC Symbol;Acc:HGNC:15986]
E-value:
9.1e-07
Percent Identity:
33.8
|
References
No references are associated with this feature.