Pseudomonas putida GB-1, PputGB1_4473

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas putida GB-1
GCF_000019125.1|latest
Locus Tag
PputGB1_4473
Name
Replicon chromosome
Genomic location 5003986 - 5004582 (+ strand)

Cross-References

RefSeq YP_001670697.1
GI 167035466
EC Number 1.15.1.1
Entrez 5872281
INSDC ABZ00362.1
NCBI Locus Tag PputGB1_4473
UniParc UPI000016FDE1
UniProtKB Acc B0KFN9
UniProtKB ID B0KFN9_PSEPG
UniRef100 UniRef100_P09223
UniRef50 UniRef50_P09223
UniRef90 UniRef90_P09223

Product

Feature Type CDS
Coding Frame 1
Product Name
superoxide dismutase
Synonyms
Evidence for Translation
Charge (pH 7) -5.18
Kyte-Doolittle Hydrophobicity Value -0.233
Molecular Weight (kDa) 21.9
Isoelectric Point (pI) 5.81

Subcellular localization

Individual Mappings
Localization Confidence PMID
Periplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
1DT0 OXIDOREDUCTASE 01/10/00 CLONING, SEQUENCE, AND CRYSTALLOGRAPHIC STRUCTURE OF RECOMBINANT IRON SUPEROXIDE DISMUTASE FROM PSEUDOMONAS OVALIS Pseudomonas putida 2.1 X-RAY DIFFRACTION 98.5
3SDP OXIDOREDUCTASE (SUPEROXIDE ACCEPTOR) 05/06/91 THE 2.1 ANGSTROMS RESOLUTION STRUCTURE OF IRON SUPEROXIDE DISMUTASE FROM PSEUDOMONAS OVALIS Pseudomonas putida 2.1 X-RAY DIFFRACTION 94.4

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 530 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG003959 (531 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PputGB1_4473

Human Homologs

Ensembl 110, assembly GRCh38.p14
superoxide dismutase 2 [Source:HGNC Symbol;Acc:HGNC:11180]
E-value: 9.2e-42
Percent Identity: 45.5
Ensembl 110, assembly GRCh38.p14
superoxide dismutase 2 [Source:HGNC Symbol;Acc:HGNC:11180]
E-value: 9.2e-42
Percent Identity: 45.5

References

No references are associated with this feature.