Pseudomonas putida GB-1, PputGB1_4710 (truB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas putida GB-1
GCF_000019125.1|latest
Locus Tag
PputGB1_4710
Name
truB
Replicon chromosome
Genomic location 5263247 - 5264164 (- strand)

Cross-References

RefSeq YP_001670932.1
GI 167035701
Entrez 5872521
INSDC ABZ00597.1
NCBI Locus Tag PputGB1_4710
UniParc UPI0000F24FBA
UniProtKB Acc B0KHX6
UniProtKB ID TRUB_PSEPG
UniRef100 UniRef100_B0KHX6
UniRef50 UniRef50_A5W985
UniRef90 UniRef90_A5W985

Product

Feature Type CDS
Coding Frame 1
Product Name
tRNA pseudouridine synthase B
Synonyms
Evidence for Translation
Charge (pH 7) -2.91
Kyte-Doolittle Hydrophobicity Value -0.258
Molecular Weight (kDa) 33452.7
Isoelectric Point (pI) 6.06

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 658 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004387 (536 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PputGB1_4710
Search term: truB

Human Homologs

Ensembl 110, assembly GRCh38.p14
TruB pseudouridine synthase family member 1 [Source:HGNC Symbol;Acc:HGNC:16060]
E-value: 1.6e-32
Percent Identity: 38.3

References

No references are associated with this feature.