Pseudomonas putida S16, PPS_0004

Gene Feature Overview

Strain	Pseudomonas putida S16 GCF_000219705.1|latest
Locus Tag	PPS_0004
Name
Replicon	chromosome
Genomic location	2486 - 4381 (- strand)

Cross-References

RefSeq	YP_004699473.1
GI	339484945
Entrez	10935676
INSDC	AEJ10593.1
NCBI Locus Tag	PPS_0004
UniParc	UPI00021722F1
UniProtKB Acc	F8FSZ5
UniProtKB ID	F8FSZ5_PSEP6
UniRef100	UniRef100_F8FSZ5
UniRef50	UniRef50_Q4K399
UniRef90	UniRef90_Q4K399

Product

Feature Type	CDS
Coding Frame	1
Product Name	tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
Synonyms
Evidence for Translation
Charge (pH 7)	-5.30
Kyte-Doolittle Hydrophobicity Value	-0.300
Molecular Weight (kDa)	69524.4
Isoelectric Point (pI)	6.42

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 507 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG005096 (534 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PPS_0004 Search term: tRNA uridine 5-carboxymethylaminomethyl modification protein GidA

Human Homologs

Ensembl 110, assembly GRCh38.p14

ENSP00000419561 mitochondrial tRNA translation optimization 1 [Source:HGNC Symbol;Acc:HGNC:19261] E-value: 2.9e-150 Percent Identity: 47.1

References