Pseudomonas putida S16, PPS_0383

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas putida S16
GCF_000219705.1|latest
Locus Tag
PPS_0383
Name
Replicon chromosome
Genomic location 457552 - 459402 (- strand)

Cross-References

RefSeq YP_004699848.1
GI 339485320
Entrez 10936051
INSDC AEJ10968.1
NCBI Locus Tag PPS_0383
UniParc UPI000217272C
UniProtKB Acc F8FZQ8
UniProtKB ID F8FZQ8_PSEP6
UniRef100 UniRef100_A0A099MV16
UniRef50 UniRef50_P26480
UniRef90 UniRef90_P52327

Product

Feature Type CDS
Coding Frame 1
Product Name
RNA polymerase sigma factor RpoD
Synonyms
Evidence for Translation
Charge (pH 7) -31.05
Kyte-Doolittle Hydrophobicity Value -0.572
Molecular Weight (kDa) 69.6
Isoelectric Point (pI) 4.60

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 591 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000559 (535 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PPS_0383

Human Homologs

References

No references are associated with this feature.