Pseudomonas putida S16, PPS_0466
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas putida S16
GCF_000219705.1|latest |
| Locus Tag |
PPS_0466
|
| Name |
|
| Replicon | chromosome |
| Genomic location | 546285 - 546635 (+ strand) |
Cross-References
| RefSeq | YP_004699931.2 |
| GI | 394896027 |
| Entrez | 10936134 |
| NCBI Locus Tag | PPS_0466 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
50S ribosomal protein L18
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | 10.68 |
| Kyte-Doolittle Hydrophobicity Value | -0.297 |
| Molecular Weight (kDa) | 12.6 |
| Isoelectric Point (pI) | 10.88 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
PDB 3D Structures
| Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
| 6SPD | RIBOSOME | 09/01/19 | Pseudomonas aeruginosa 50s ribosome from a clinical isolate | Pseudomonas aeruginosa | 3.28 | ELECTRON MICROSCOPY | 90.3 |
| 6SPB | RIBOSOME | 09/01/19 | Pseudomonas aeruginosa 50s ribosome from a clinical isolate with a mutation in uL6 | Pseudomonas aeruginosa | 2.82 | ELECTRON MICROSCOPY | 90.3 |
| 6SPG | RIBOSOME | 09/01/19 | Pseudomonas aeruginosa 70s ribosome from a clinical isolate | Pseudomonas aeruginosa | 3.34 | ELECTRON MICROSCOPY | 90.3 |
| 6SPF | RIBOSOME | 09/01/19 | Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate | Pseudomonas aeruginosa | 2.89 | ELECTRON MICROSCOPY | 90.3 |
Pathogen Association Analysis
| Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 591 genera
|
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG001463 (535 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: PPS_0466
Search term: 50S ribosomal protein L18
|
Human Homologs
References
No references are associated with this feature.