Pseudomonas putida S16, PPS_0542

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas putida S16
GCF_000219705.1|latest
Locus Tag
PPS_0542
Name
Replicon chromosome
Genomic location 618250 - 620238 (+ strand)

Cross-References

RefSeq YP_004700007.1
GI 339485479
Entrez 10936210
INSDC AEJ11127.1
NCBI Locus Tag PPS_0542
UniParc UPI000217283C
UniProtKB Acc F8G2D7
UniProtKB ID F8G2D7_PSEP6
UniRef100 UniRef100_A0A099MSM1
UniRef50 UniRef50_I7AXH0
UniRef90 UniRef90_Q88QE8

Product

Feature Type CDS
Coding Frame 1
Product Name
Fis family GAF modulated sigma54 specific transcriptional regulator
Synonyms
Evidence for Translation
Charge (pH 7) 0.45
Kyte-Doolittle Hydrophobicity Value -0.298
Molecular Weight (kDa) 73.3
Isoelectric Point (pI) 7.04

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 479 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001662 (518 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PPS_0542

Human Homologs

References

No references are associated with this feature.