Pseudomonas putida S16, PPS_1048

Gene Feature Overview

Strain	Pseudomonas putida S16 GCF_000219705.1|latest
Locus Tag	PPS_1048
Name
Replicon	chromosome
Genomic location	1166474 - 1167826 (+ strand)

Cross-References

RefSeq	YP_004700503.1
GI	339485975
Entrez	10936706
INSDC	AEJ11623.1
NCBI Locus Tag	PPS_1048
UniParc	UPI0002173F3F
UniProtKB Acc	F8FXB7
UniProtKB ID	F8FXB7_PSEP6
UniRef100	UniRef100_A0A059UWA9
UniRef50	UniRef50_Q51485
UniRef90	UniRef90_Q88P34

Product

Feature Type	CDS
Coding Frame	1
Product Name	carbohydrate-selective porin OprB
Synonyms
Evidence for Translation
Charge (pH 7)	-5.89
Kyte-Doolittle Hydrophobicity Value	-0.415
Molecular Weight (kDa)	50.0
Isoelectric Point (pI)	5.86

Subcellular localization

Individual Mappings	Localization Confidence PMID Outer Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession	Header	Accession Date	Compound	Source	Resolution	Method	Percent Identity
4GF4	TRANSPORT PROTEIN	08/02/12	Low pH structure of Pseudomonas putida OprB	Pseudomonas putida	3.1	X-RAY DIFFRACTION	97.4
4GEY	TRANSPORT PROTEIN	08/02/12	High pH structure of Pseudomonas putida OprB	Pseudomonas putida	2.7	X-RAY DIFFRACTION	97.8

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 51 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG002430 (700 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PPS_1048 Search term: carbohydrate-selective porin OprB

Human Homologs

References