Pseudomonas putida S16, PPS_1126

Gene Feature Overview

Strain	Pseudomonas putida S16 GCF_000219705.1|latest
Locus Tag	PPS_1126
Name
Replicon	chromosome
Genomic location	1258691 - 1259890 (- strand)

Cross-References

RefSeq	YP_004700581.1
GI	339486053
Entrez	10936784
INSDC	AEJ11701.1
NCBI Locus Tag	PPS_1126
UniParc	UPI0002174145
UniProtKB Acc	F8FYN8
UniProtKB ID	F8FYN8_PSEP6
UniRef100	UniRef100_A0A059UXW1
UniRef50	UniRef50_D8IR29
UniRef90	UniRef90_I7BWZ7

Product

Feature Type	CDS
Coding Frame	1
Product Name	L-carnitine dehydratase/bile acid-inducible protein F
Synonyms
Evidence for Translation
Charge (pH 7)	-6.57
Kyte-Doolittle Hydrophobicity Value	-0.096
Molecular Weight (kDa)	43.4
Isoelectric Point (pI)	5.31

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 312 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG001950 (526 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PPS_1126 Search term: L-carnitine dehydratase/bile acid-inducible protein F

Human Homologs

Ensembl 110, assembly GRCh38.p14

ENSP00000338475 succinyl-CoA:glutarate-CoA transferase [Source:HGNC Symbol;Acc:HGNC:16001] E-value: 2.3e-52 Percent Identity: 30.6

References