Pseudomonas putida S16, PPS_1825

Gene Feature Overview

Strain	Pseudomonas putida S16 GCF_000219705.1|latest
Locus Tag	PPS_1825
Name
Replicon	chromosome
Genomic location	2043115 - 2044761 (+ strand)

Cross-References

RefSeq	YP_004701274.1
GI	339486746
Entrez	10937477
INSDC	AEJ12394.1
NCBI Locus Tag	PPS_1825
UniParc	UPI00021734C4
UniProtKB Acc	F8FW60
UniProtKB ID	F8FW60_PSEP6
UniRef100	UniRef100_A0A099MYS1
UniRef50	UniRef50_D8J0A4
UniRef90	UniRef90_A0A059UR68

Product

Feature Type	CDS
Coding Frame	1
Product Name	AMP-dependent synthetase and ligase
Synonyms
Evidence for Translation
Charge (pH 7)	-13.68
Kyte-Doolittle Hydrophobicity Value	-0.145
Molecular Weight (kDa)	59.6
Isoelectric Point (pI)	5.67

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 594 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG003016 (484 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PPS_1825 Search term: AMP-dependent synthetase and ligase

Human Homologs

Ensembl 110, assembly GRCh38.p14

ENSP00000327916 acyl-CoA synthetase medium chain family member 5 [Source:HGNC Symbol;Acc:HGNC:26060] E-value: 3.4e-78 Percent Identity: 35.6

References