Pseudomonas putida S16, PPS_2088

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas putida S16
GCF_000219705.1|latest
Locus Tag
PPS_2088
Name
Replicon chromosome
Genomic location 2331828 - 2332697 (- strand)

Cross-References

RefSeq YP_004701531.1
GI 339487003
Entrez 10937734
INSDC AEJ12651.1
NCBI Locus Tag PPS_2088
UniParc UPI0002173C54
UniProtKB Acc F8G1F7
UniProtKB ID F8G1F7_PSEP6
UniRef100 UniRef100_A0A099MZF8
UniRef50 UniRef50_Q4K9M0
UniRef90 UniRef90_Q88JV0

Product

Feature Type CDS
Coding Frame 1
Product Name
LysR family transcriptional regulator
Synonyms
Evidence for Translation
Charge (pH 7) -1.53
Kyte-Doolittle Hydrophobicity Value -0.029
Molecular Weight (kDa) 32.0
Isoelectric Point (pI) 6.74

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 546 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG003794 (415 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PPS_2088

Human Homologs

References

No references are associated with this feature.