Pseudomonas putida S16, PPS_2715

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas putida S16
GCF_000219705.1|latest
Locus Tag
PPS_2715
Name
Replicon chromosome
Genomic location 3008874 - 3011366 (+ strand)

Cross-References

RefSeq YP_004702146.1
GI 339487618
Entrez 10938349
INSDC AEJ13266.1
NCBI Locus Tag PPS_2715
UniParc UPI0002173C7C
UniProtKB Acc F8FV15
UniProtKB ID F8FV15_PSEP6
UniRef100 UniRef100_F8FV15
UniRef50 UniRef50_Q9I1X7
UniRef90 UniRef90_L0FHZ0

Product

Feature Type CDS
Coding Frame 1
Product Name
ATP-dependent DNA ligase
Synonyms
Evidence for Translation
Charge (pH 7) 15.94
Kyte-Doolittle Hydrophobicity Value -0.478
Molecular Weight (kDa) 92568.6
Isoelectric Point (pI) 9.39

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 292 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG003336 (490 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PPS_2715

Human Homologs

Ensembl 110, assembly GRCh38.p14
DNA ligase 1 [Source:HGNC Symbol;Acc:HGNC:6598]
E-value: 5.8e-21
Percent Identity: 28.8
Ensembl 110, assembly GRCh38.p14
DNA ligase 1 [Source:HGNC Symbol;Acc:HGNC:6598]
E-value: 5.8e-21
Percent Identity: 28.8
Ensembl 110, assembly GRCh38.p14
DNA ligase 1 [Source:HGNC Symbol;Acc:HGNC:6598]
E-value: 5.8e-21
Percent Identity: 28.8
Ensembl 110, assembly GRCh38.p14
DNA ligase 1 [Source:HGNC Symbol;Acc:HGNC:6598]
E-value: 5.8e-21
Percent Identity: 28.8
Ensembl 110, assembly GRCh38.p14
DNA ligase 1 [Source:HGNC Symbol;Acc:HGNC:6598]
E-value: 5.8e-21
Percent Identity: 28.8
Ensembl 110, assembly GRCh38.p14
DNA ligase 1 [Source:HGNC Symbol;Acc:HGNC:6598]
E-value: 5.8e-21
Percent Identity: 28.8
Ensembl 110, assembly GRCh38.p14
DNA ligase 1 [Source:HGNC Symbol;Acc:HGNC:6598]
E-value: 5.8e-21
Percent Identity: 28.8
Ensembl 110, assembly GRCh38.p14
DNA ligase 1 [Source:HGNC Symbol;Acc:HGNC:6598]
E-value: 5.8e-21
Percent Identity: 28.8

References

No references are associated with this feature.